Dorje Shugden is a fully Enlightened Buddha and I don't think that such a kind, compassionate and helpful Being such as Dorje Shugden would have the negative karma to be able to be put down by organizations or people who are lower than Him.
I decided to check on the website earlier and I was redirected to a yellow page with the word APOLOGY written in huge bold letters together with a statement which I have attached below.
From
http://www.antishugden.com/"We, from Gangchen Kyishong (a place in Dharamsala that houses the offices of the Tibetan government-in-exile, now called Central Tibetan Administration, or CTA), used to run and manage this website
www.antishugden.com, providing information that is totally untrue, which is meant to smear and defame the Tibetan Protector Dorje Shugden for our own political gains.
We realized that it was a big mistake, because Dorje Shugden is actually an Enlightened Being, a Buddha, who is an Emanation of Manjushri, and that the whole reason why the Dalai Lama banned Dorje Shugden is actually to make Dorje Shugden even more famous and widespread, because the Dalai Lama and Dorje Shugden are both ENLIGHTENED, so they cannot be actually going against each other for real, their only motivation is to benefit all sentient beings.
Therefore, we sincerely apologize for our ignorance, and we urge all Buddhist practitioners especially Tibetan Buddhists to embrace and practise Dorje Shugden, because His time has come, His practice will be most efficacious and beneficial at this time, our Dharma practice will come to fruition much more faster with the practice of Dorje Shugden.
Below is the proof of what this
www.antishugden.com website used to be, and we humbly seek forgiveness from high lamas and all practitioners of the Dorje Shugden lineage which we have caused so much trouble for.
Once again, we would like to reiterate that Dorje Shugden is a Buddha, and everybody should practise DORJE SHUGDEN."
I was surprised to see that they took the old website down and even published an apology regarding their wrongdoing.
I take this to be a good sign that the CTA finally realise that they have been wrong all this while and that the ban will be lifted soon!